Hi,
Use of --barcoding and --fast5 give error. Here is the command and the error.
Thanks
poreplex -i INPUT -o OUTPUT --barcoding --trim-adapter --basecall --parallel 5 --fast5
==> Processing FAST5 files
ERROR: Unhandled error [Errno 2] No such file or directory: '~/fast5/pass/BC3/FAK84611_6b938d7e6efe081830fee799484ebdfbbf1725f6_3.fast5'Task exception was never retrieved
future: <Task finished coro=<ProcessingSession.run_process_batch() done, defined at ~/lib/python3.5/site-packages/poreplex/pipeline.py:183> exception=CancelledError()>
concurrent.futures._base.CancelledError
| 100% of 665704 |################################| Elapsed: 0:00:19 Time: 0:00:19
Hi, Use of --barcoding and --fast5 give error. Here is the command and the error. Thanks poreplex -i INPUT -o OUTPUT --barcoding --trim-adapter --basecall --parallel 5 --fast5
Poreplex version 0.4.1 by Hyeshik Chang hyeshik@snu.ac.kr
== Analysis settings ======================================
Basecall table in output: No
==> Processing FAST5 files ERROR: Unhandled error [Errno 2] No such file or directory: '~/fast5/pass/BC3/FAK84611_6b938d7e6efe081830fee799484ebdfbbf1725f6_3.fast5'Task exception was never retrieved future: <Task finished coro=<ProcessingSession.run_process_batch() done, defined at ~/lib/python3.5/site-packages/poreplex/pipeline.py:183> exception=CancelledError()> concurrent.futures._base.CancelledError | 100% of 665704 |################################| Elapsed: 0:00:19 Time: 0:00:19
==> Terminated.