hyeshik / poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing
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error when barcoding and fast5 flags used #19

Open teshomeb opened 5 years ago

teshomeb commented 5 years ago

Hi, Use of --barcoding and --fast5 give error. Here is the command and the error. Thanks poreplex -i INPUT -o OUTPUT --barcoding --trim-adapter --basecall --parallel 5 --fast5

Poreplex version 0.4.1 by Hyeshik Chang hyeshik@snu.ac.kr

== Analysis settings ======================================

==> Processing FAST5 files ERROR: Unhandled error [Errno 2] No such file or directory: '~/fast5/pass/BC3/FAK84611_6b938d7e6efe081830fee799484ebdfbbf1725f6_3.fast5'Task exception was never retrieved future: <Task finished coro=<ProcessingSession.run_process_batch() done, defined at ~/lib/python3.5/site-packages/poreplex/pipeline.py:183> exception=CancelledError()> concurrent.futures._base.CancelledError | 100% of 665704 |################################| Elapsed: 0:00:19 Time: 0:00:19

==> Terminated.