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hyperflow-wms / hyperflow

HyperFlow: a scientific workflow engine
MIT License
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Generating Montage Workflow #32

Open Ali-Alhaboby opened 4 years ago

Ali-Alhaboby commented 4 years ago

I run the following command but it showed errors as shown blew ubuntu@ip-172-31-94-16:~$ ./bootstrap.sh 1.0 Creating work directory... Generating metadata... Generating DAX... [struct stat="ERROR", msg="Can't find RA in lookup return."] mDAG failed

mpawlik commented 4 years ago

Hello,

unfortunately data repository has moved to https protocol, which is not supported by the montage tool set required in the tutorial. We're working on supporting a more recent version of montage: https://github.com/hyperflow-wms/montage2-workflow but we don't have a tutorial for it yet. It's also possible to follow the old tutorial, but grab prepared inputs (outputs of ./boostrap.sh 0.25), available here: https://github.com/hyperflow-wms/montage-workflow

Ali-Alhaboby commented 4 years ago

Thank you for your reply, I tried with your steps but still couldn't generate it. Is there any website to supply me with montage workflow degrees in an XML format file with data dependencies? Regards, Ali

mpawlik commented 4 years ago

Hello,

yes, please have a look here: https://github.com/hyperflow-wms/montage-workflow , 'Running locally' paragraph has links to zip files.

Ali-Alhaboby commented 4 years ago

Dear Maciej Pawlik, I have tested the data in https://github.com/hyperflow-wms/montage-workflow but do you have the same data with XML file instead of the JSON extension file.? because I need to use XML extension file. Regards,