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hyperion-rt / hyperion

Hyperion Radiative Transfer Code
http://www.hyperion-rt.org
BSD 2-Clause "Simplified" License
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Fix warnings during tests #210

Closed astrofrog closed 5 years ago

astrofrog commented 5 years ago

Now that pytest shows warnings emitted during tests, it would be good to go through and systematically fix them:

hyperion/util/decorator.py:81
  /root/project/build/lib.linux-x86_64-3.6/hyperion/util/decorator.py:81: DeprecationWarning: invalid escape sequence \s
    DEF = re.compile('\s*def\s*([_\w][_\w\d]*)\s*\(')

hyperion/model/model_output.py:23
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:23: DeprecationWarning: invalid escape sequence \l
    LABEL['I'] = '$\lambda\, F_\lambda$'

hyperion/model/model_output.py:24
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:24: DeprecationWarning: invalid escape sequence \l
    LABEL['Q'] = '$\lambda\, F_\lambda$ [stokes=Q]'

hyperion/model/model_output.py:25
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:25: DeprecationWarning: invalid escape sequence \l
    LABEL['U'] = '$\lambda\, F_\lambda$ [stokes=U]'

hyperion/model/model_output.py:26
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:26: DeprecationWarning: invalid escape sequence \l
    LABEL['V'] = '$\lambda\, F_\lambda$ [stokes=V]'

hyperion/model/tests/test_bit_level.py:26
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py:26: PytestDeprecationWarning: the `pytest.config` global is deprecated.  Please use `request.config` or `pytest_configure` (if you're a pytest plugin) instead.
    bit_level = pytest.mark.skipif(str(not pytest.config.getoption('enable_bit_level_tests')))

build/lib.linux-x86_64-3.6/hyperion/conf/tests/test_conf_io.py::test_io_image_conf
  /root/project/build/lib.linux-x86_64-3.6/hyperion/conf/conf_files.py:894: DeprecationWarning: set_aperture_range has been renamed to set_aperture_radii
    warnings.warn("set_aperture_range has been renamed to set_aperture_radii", DeprecationWarning)

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_flared_disk_mass_swap1
build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_flared_disk_mass_swap_invertible
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/flared_disk.py:140: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of mass with value derived from rho_0")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_flared_disk_mass_swap1
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/flared_disk.py:108: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of rho_0 with value derived from mass")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_alpha_disk_mass_swap1
build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_alpha_disk_mass_swap_invertible
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/alpha_disk.py:170: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of mass with value derived from rho_0")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_alpha_disk_mass_swap1
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/alpha_disk.py:135: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of rho_0 with value derived from mass")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_alpha_disk_swap1
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/alpha_disk.py:322: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of mdot with value derived from lvisc")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_alpha_disk_swap1
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/alpha_disk.py:296: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of lvisc with value derived from mdot")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_power_law_envelope_swap1
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/power_law_envelope.py:154: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of mass with value derived from rho_0")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_power_law_envelope_swap1
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/power_law_envelope.py:131: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of rho_0 with value derived from mass")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_ulrich_envelope_swap
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/ulrich_envelope.py:250: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of mdot with value derived from rho_0")

build/lib.linux-x86_64-3.6/hyperion/densities/tests/test_densities.py::test_ulrich_envelope_swap
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/ulrich_envelope.py:226: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Overriding value of rho_0 with value derived from mdot")

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_dust.py::TestSphericalDust::test_plot
build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /usr/local/lib/python3.6/dist-packages/matplotlib/axes/_base.py:3507: UserWarning: Attempting to set identical bottom==top results
  in singular transformations; automatically expanding.
  bottom=1.0, top=1.0
    self.set_ylim(upper, lower, auto=None)

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_io
build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/optical_properties.py:83: RuntimeWarning: invalid value encountered in true_divide
    self.P1[inu, :] /= norm

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_io
build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/optical_properties.py:84: RuntimeWarning: invalid value encountered in true_divide
    self.P2[inu, :] /= norm

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_io
build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/optical_properties.py:85: RuntimeWarning: invalid value encountered in true_divide
    self.P3[inu, :] /= norm

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_io
build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/optical_properties.py:86: RuntimeWarning: invalid value encountered in true_divide
    self.P4[inu, :] /= norm

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /usr/local/lib/python3.6/dist-packages/matplotlib/contour.py:1557: UserWarning: Warning: converting a masked element to nan.
    self.zmax = float(z.max())

build/lib.linux-x86_64-3.6/hyperion/dust/tests/test_optical_properties.py::test_plot
  /usr/local/lib/python3.6/dist-packages/matplotlib/contour.py:1558: UserWarning: Warning: converting a masked element to nan.
    self.zmin = float(z.min())

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_grid.py::test_grid_cylindrical_ranges
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/cylindrical_polar_grid.py:124: RuntimeWarning: invalid value encountered in log10
    self.w = 10. ** ((np.log10(w_wall[:-1]) + np.log10(w_wall[1:])) / 2.)

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_grid.py::test_grid_spherical_ranges
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/spherical_polar_grid.py:129: RuntimeWarning: invalid value encountered in log10
    self.r = 10. ** ((np.log10(r_wall[:-1]) + np.log10(r_wall[1:])) / 2.)

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_empty[car]
build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_single[car]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/cartesian_grid.py:406: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("No geometry in target grid - copying from original grid")

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_empty[sph]
build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_single[sph]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/spherical_polar_grid.py:442: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("No geometry in target grid - copying from original grid")

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_empty[cyl]
build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_single[cyl]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/cylindrical_polar_grid.py:432: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("No geometry in target grid - copying from original grid")

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_empty[amr]
build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_single[amr]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/amr_grid.py:493: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("No geometry in target grid - copying from original grid")

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_empty[oct]
build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_views.py::TestView::test_transfer_single[oct]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/grid/octree_grid.py:503: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("No geometry in target grid - copying from original grid")

build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_voronoi.py::test_io
build/lib.linux-x86_64-3.6/hyperion/grid/tests/test_voronoi.py::test_init_sparse
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_image_wav
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_sed_wav
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_image_shape
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_sed_shape
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_image_values
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_group
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_dim
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_dim_incl1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_dim_incl2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_dim_incl_invalid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_dim_incl_invalid2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_dim_incl_invalid3
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[I]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[Q]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[U]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[V]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[linpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[circpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes_invalid[A]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes_invalid[b]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes_invalid[i]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes_invalid[q]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes_invalid[u]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes_invalid[v]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_nodistance_units[ergs/s]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_nodistance_units_invalid[ergs/cm^2/s]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_nodistance_units_invalid[mJy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_nodistance_units_invalid[Jy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_nodistance_units_invalid[ergs/cm^2/s/Hz]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_nodistance_units_invalid[MJy/sr]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_source_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_source_valid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_source_valid2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_source_valid3
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_source_valid4
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_dust_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_dust_valid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingScatterings::test_image_n_scat_main_components
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingScatterings::test_image_n_scat_n_scat_valid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingScatterings::test_image_n_scat_values
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestSimpleModelInside::test_distance_fail
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::test_regression_depth_bug
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImage::test_get_image_object
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImage::test_image_attributes_no_distance
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImage::test_image_attributes_distance
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImage::test_unit_conversion
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestInsideImage::test_get_image_object
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestInsideImage::test_image_attributes_no_distance
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestInsideImage::test_image_distance
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestInsideImage::test_unit_conversion
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::test_flux_preserved_scatterings
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_I
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[Q]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[U]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[V]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[linpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[circpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_io.py::test_io_voronoi
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_mono.py::test_check_weighting
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_group
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_incl1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_incl2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_incl_invalid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_incl_invalid2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_incl_invalid3
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_aper1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_aper2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_aper_invalid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_aper_invalid2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_dim_aper_invalid3
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[I]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[Q]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[U]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[V]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[linpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[circpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes_invalid[A]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes_invalid[b]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes_invalid[i]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes_invalid[q]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes_invalid[u]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes_invalid[v]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_nodistance_units[ergs/s]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_nodistance_units_invalid[ergs/cm^2/s]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_nodistance_units_invalid[mJy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_nodistance_units_invalid[Jy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_nodistance_units_invalid[ergs/cm^2/s/Hz]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_nodistance_units_invalid[MJy/sr]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_valid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_valid2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_valid3
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_valid4
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_dust_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_dust_valid1
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingScatterings::test_sed_n_scat_main_components
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingScatterings::test_sed_n_scat_n_scat_valid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingScatterings::test_sed_n_scat_values
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSED::test_get_sed_object
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSED::test_sed_attributes_no_distance
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSED::test_sed_attributes_distance
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSED::test_unit_conversion
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDStokesOption::test_get_sed_I
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDStokesOption::test_get_sed_stokes[Q]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDStokesOption::test_get_sed_stokes[U]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDStokesOption::test_get_sed_stokes[V]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDStokesOption::test_get_sed_stokes[linpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDStokesOption::test_get_sed_stokes[circpol]
  /usr/local/lib/python3.6/dist-packages/h5py/_hl/dataset.py:313: H5pyDeprecationWarning: dataset.value has been deprecated. Use dataset[()] instead.
    "Use dataset[()] instead.", H5pyDeprecationWarning)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_differing_widths[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_differing_widths[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_differing_widths[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_misaligned_grids_same_level[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_misaligned_grids_same_level[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_misaligned_grids_same_level[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_non_integer_refinement[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_non_integer_refinement[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_non_integer_refinement[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_not_aligned_across_levels[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_not_aligned_across_levels[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_not_aligned_across_levels[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_full
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_not_frozen
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_not_frozen
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_dynamic_evaluation
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_dynamic_evaluation
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_quantities_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_quantities_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_geometry_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_geometry_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_ambient_medium
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_rmin_zero[cylindrical]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_rmin_zero[spherical]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_manual_grid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPascucciBenchmark::test_pascucci[0.1]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_image_wav
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_fortran.py::test_point_source_outside_grid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_fortran.py::test_spectrum_dust_nooverlap
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_get_quantities.py::test_no_initial
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingScatterings::test_image_invalid_option
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::test_regression_depth_bug
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::TestMerge::test_merge_no[car]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::TestMerge::test_merge_no[car]
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_copy_link.py::TestWriteDustCopy::test_link_filename
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_copy_link.py::TestWriteDustCopy::test_link_object
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_mono.py::test_check_weighting
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[density]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[density_diff]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[n_photons]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[specific_energy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_density
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianBase::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianBase::test_ptsource_vertices
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianSmall::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianSmall::test_ptsource_edge
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_edge
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build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_origin_peeloff
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_edge
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_vertices_noclip
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_origin_peeloff
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingScatterings::test_sed_invalid_option
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_initial
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_additional
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_additional_noiter
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_grid_from_disk.py::test_use_grid_from_file
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[car-copy0]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[car-copy1]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[car-copy2]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[sph-copy3]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[sph-copy4]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[sph-copy5]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[cyl-copy6]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[cyl-copy7]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[cyl-copy8]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[amr-copy9]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[amr-copy10]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[amr-copy11]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[oct-copy12]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[oct-copy13]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[oct-copy14]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/mean_opacities.py:54: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Planck function for lowest temperature not completely covered by opacity function")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_differing_widths[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_differing_widths[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_differing_widths[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_misaligned_grids_same_level[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_misaligned_grids_same_level[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_misaligned_grids_same_level[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_non_integer_refinement[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_non_integer_refinement[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_non_integer_refinement[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_not_aligned_across_levels[x]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_not_aligned_across_levels[y]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_amr_checks.py::test_amr_not_aligned_across_levels[z]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_full
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_not_frozen
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_not_frozen
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_dynamic_evaluation
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_dynamic_evaluation
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_quantities_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_quantities_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_geometry_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_geometry_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_ambient_medium
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_rmin_zero[cylindrical]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_rmin_zero[spherical]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical_optthin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_manual_grid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPascucciBenchmark::test_pascucci[0.1]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_filters.py::TestFilters::test_image_wav
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_fortran.py::test_point_source_outside_grid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_fortran.py::test_spectrum_dust_nooverlap
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_get_quantities.py::test_no_initial
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingDetailed::test_image_source_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModelTrackingScatterings::test_image_invalid_option
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::test_regression_depth_bug
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_temperature_scalar
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::TestAllGridTypes::test_mismatch_density_energy_1[car]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::TestMerge::test_merge_no[car]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::TestMerge::test_merge_no[car]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::TestMerge::test_merge_no[car]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_copy_link.py::TestWriteDustCopy::test_copy_filename
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_copy_link.py::TestWriteDustCopy::test_copy_object
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_copy_link.py::TestWriteDustCopy::test_link_filename
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model_copy_link.py::TestWriteDustCopy::test_link_object
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_mono.py::test_mono_zero_prob
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_mono.py::test_check_weighting
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[density]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[density_diff]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[n_photons]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[specific_energy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_density
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianBase::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianBase::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianBase::test_ptsource_edge
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianBase::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianLarge::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianLarge::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianLarge::test_ptsource_edge
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianLarge::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianSmall::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianSmall::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianSmall::test_ptsource_edge
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCartesianSmall::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_edge
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_vertices_noclip
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_origin_peeloff
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestSphericalBase::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_origin
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_vertices
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_edge
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_vertices_noclip
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_origin_peeloff
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_propagation.py::TestCylindricalBase::test_ptsource_origin_peeloff_aligned
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingDetailed::test_sed_source_all
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModelTrackingScatterings::test_sed_invalid_option
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_initial
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_additional
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_additional_noiter
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_grid_from_disk.py::test_use_grid_from_file
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[car-copy0]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[car-copy1]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[car-copy2]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[sph-copy3]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[sph-copy4]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[sph-copy5]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[cyl-copy6]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[cyl-copy7]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[cyl-copy8]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[amr-copy9]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[amr-copy10]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[amr-copy11]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[oct-copy12]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[oct-copy13]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_use_previous.py::test_use_quantities[oct-copy14]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/emissivities.py:46: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Planck function for lowest temperature not completely covered by opacity function")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_full
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_optthinradius_check_not_frozen
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_quantities_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_analytical_yso_use_geometry_invalid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_manual_grid
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[1000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[10000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[100000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[1000000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[1000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[10000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[100000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[1000000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_specific_energy[1000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_specific_energy[10000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_specific_energy[100000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_specific_energy[1000000]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/flared_disk.py:346: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Re-scaling factor is significantly different from 1, which indicates that the grid may be too coarse to properly resolve the disk.")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/ulrich_envelope.py:434: RuntimeWarning: invalid value encountered in log
    * (np.log((np.sqrt(gamma_1) + 1) / (1. - np.sqrt(gamma_1)))

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/ulrich_envelope.py:35: RuntimeWarning: invalid value encountered in power
    s = dr ** (1. / 3.)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_cylindrical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/ulrich_envelope.py:40: RuntimeWarning: invalid value encountered in power
    t = dr ** (1. / 3.)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_analytical_yso.py::test_complete_spherical_optthin
  /root/project/build/lib.linux-x86_64-3.6/hyperion/densities/ulrich_envelope.py:357: RuntimeWarning: divide by zero encountered in true_divide
    * (mu / mu0 + 2. * mu0 ** 2 * self.rc / r) ** -1.)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPascucciBenchmark::test_pascucci[0.1]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPascucciBenchmark::test_pascucci[1]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPascucciBenchmark::test_pascucci[10]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPascucciBenchmark::test_pascucci[100]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[1000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[10000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[100000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_seds[1000000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[1000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[10000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[100000]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_bit_level.py::TestPinteBenchmark::test_pinte_images[1000000]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/conf/conf_files.py:935: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Removing non-monochromatic wavelength settings")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_fortran.py::test_spectrum_dust_nooverlap
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/mean_opacities.py:58: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Planck function for highest temperature not completely covered by opacity function")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_fortran.py::test_spectrum_dust_nooverlap
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/emissivities.py:50: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Planck function for highest temperature not completely covered by opacity function")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[linpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[linpol]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:877: RuntimeWarning: invalid value encountered in true_divide
    flux = np.sqrt((flux[1] ** 2 + flux[2] ** 2) / flux[0] ** 2)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageSimpleModel::test_image_stokes[circpol]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_image.py::TestImageStokesOption::test_get_image_stokes[circpol]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:883: RuntimeWarning: invalid value encountered in true_divide
    flux = np.abs(flux[3] / flux[0])

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_temperature_scalar
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_temperature_scalar_list
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_temperature_scalar_2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_temperature_scalar_list_2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_specific_energy_scalar
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_specific_energy_scalar_list
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_specific_energy_scalar_2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_minimum_energy.py::test_minimum_specific_energy_scalar_list_2
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[density]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[density_diff]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[n_photons]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[specific_energy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_exist[specific_energy]
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_density
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_output_physical.py::test_output_grids_density
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_initial
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_specific_energy_type.py::TestSpecificEnergyType::test_specific_energy_additional
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:1098: DeprecationWarning: get_physical_grid is deprecated, use get_quantities instead
    warnings.warn("get_physical_grid is deprecated, use get_quantities instead", DeprecationWarning)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::test_dust_mix
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::test_voronoi_basics
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::test_dust_changed_nosave
build/lib.linux-x86_64-3.6/hyperion/model/tests/test_model.py::test_dust_changed_save
  /root/project/build/lib.linux-x86_64-3.6/hyperion/dust/dust_type.py:339: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Version 1 dust file detected - discarding mean opacities and recomputing them")

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[linpol]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:500: RuntimeWarning: invalid value encountered in true_divide
    flux = np.sqrt((flux[1] ** 2 + flux[2] ** 2) / flux[0] ** 2)

build/lib.linux-x86_64-3.6/hyperion/model/tests/test_sed.py::TestSEDSimpleModel::test_sed_stokes[circpol]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/model/model_output.py:506: RuntimeWarning: invalid value encountered in true_divide
    flux = np.abs(flux[3] / flux[0])

build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[Source]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[PointSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[PointSourceCollection]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[SpotSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[SphericalSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[ExternalSphericalSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[ExternalBoxSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[MapSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_tuple_sort[PlaneParallelSource]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/sources/source.py:206: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
    logger.warn("Spectrum is being re-sorted in order of increasing frequency")

build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[Source]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[PointSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[PointSourceCollection]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[SpotSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[SphericalSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[ExternalSphericalSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[ExternalBoxSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[MapSource]
build/lib.linux-x86_64-3.6/hyperion/sources/tests/test_source.py::test_spectrum_nan[PlaneParallelSource]
  /root/project/build/lib.linux-x86_64-3.6/hyperion/sources/source.py:190: RuntimeWarning: invalid value encountered in less_equal
    if np.any(nu <= 0.):

build/lib.linux-x86_64-3.6/hyperion/util/tests/test_interpolate.py::TestLogLin::test_interp_linear_array_fill
  /root/project/build/lib.linux-x86_64-3.6/hyperion/util/tests/test_interpolate.py:120: RuntimeWarning: divide by zero encountered in log
    self.f = lambda self, x: np.log(2. * x)
astrofrog commented 5 years ago

There are now fewer than 10 warnings - some are beyond our control, so this is basically addressed.