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hypnopump / MiniFold

MiniFold: Deep Learning for Protein Structure Prediction inspired by DeepMind AlphaFold algorithm
MIT License
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what's the meaning of paramter "17"? #29

Closed fakerXue closed 4 years ago

fakerXue commented 4 years ago

微信图片_20200607162127

the picture from file "angle_data_preparation_py.ipynb"

hypnopump commented 4 years ago

so basically this 17 means that I'm taking the AAs from [-17, +17) wrt to the AA being predicted. That makes a 34AA-long sequence. The goal of the network is to predict the Angles of the AA based on its neighbouring AAs.

fakerXue commented 4 years ago

so basically this 17 means that I'm taking the AAs from [-17, +17) wrt to the AA being predicted. That makes a 34AA-long sequence. The goal of the network is to predict the Angles of the AA based on its neighbouring AAs.

thank you! I got it