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hytest-org / hytest

https://hytest-org.github.io/hytest/
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Explore R environments on ESIP qhub #103

Open rsignell-usgs opened 1 year ago

rsignell-usgs commented 1 year ago

@jesse-ross , welcome to the HyTEST team! It would be great if you could explore setting up a decent R environment on ESIP qhub to access cloud-optimized datasets like the CONUS404.

You should have access to https://jupyter.qhub.esipfed.org with your github credentials.

Check out https://jupyter.qhub.esipfed.org/hub/user-redirect/lab/tree/shared/users/Welcome.ipynb for some introductory info on using the hub.

jesse-ross commented 1 year ago

@rsignell-usgs Thanks! In #72, I had been planning on building a docker image with the capacity to access CONUS404. This will provide an example for other R users who are planning on accessing CONUS404 in AWS or HPC context. The advantage here is that it's straightforward to build RStudio into such an image.

Is there a way to integrate a custom docker image into qhub? Or would I need to build a conda environment with the necessary toolchain, so that users would use that environment through Jupyter notebooks?