calc_mappability - Githubissues

hyunhwan-jeong / CB2

CB2 is an R package which provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

https://cran.r-project.org/web/packages/CB2/index.html

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calc_mappability #5

Closed AMChalkie closed 4 years ago

AMChalkie commented 4 years ago

Hi,

It would be useful if this table also produced:

total reads
number of mapped reads.

Thanks

hyunhwan-jeong commented 4 years ago

That will be a good suggestion. I will update it soon.

Thank you,

Hyun-Hwan Jeong