Closed wwliao closed 6 years ago
Dear @wwliao,
I am happy to hear you like the SalmonTE! To solve the issue properly, I may need your input, so could you answer my questions if you are fine?
expr.csv
and phenotype.csv
to my email (hyunhwaj@bcm.edu)? Those files will be used for a debugging, and I will promise I will completely remove the file. If you don't want then you can tell me a brief description of the files, like how many records and columns are in the files. This will help me.Best,
Hyun-Hwan Jeong
Thanks for your prompt reply! I used the following commands to run SalmonTE:
$ SalmonTE.py quant --reference=hs --exprtype=count data
$ SalmonTE.py test --inpath=SalmonTE_output --outpath=tmp --tabletype=csv --figtype=png
Best, Wen-Wei
@wwliao, This problem happened because my code did not handle the sample names with a hyphen, but not I have fixed the code, so I believe you are fine now.
Please pull
the changes and run the test
mode again.
Best,
Hyun-Hwan
It works! Thanks for your kind help.
Wen-Wei
You’re welcome! Thanks for the reporting!
Hi there,
Thanks for developing SalmonTE! It's really fast and suitable for large-scale project. But I got an error when running
SalmonTE.py test
:Here is a possible solution I found. I hope it's helpful. By the way, I use R version 3.4.1.
Best, Wen-Wei