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hyunhwan-jeong / SalmonTE

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
GNU General Public License v3.0
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Extract Reads similar to TE sequences #38

Closed juanb001 closed 1 year ago

juanb001 commented 4 years ago

Hi,

Would it be possible/easy to incorporate an option where SalmonTE outputs a file containing the reads used to generate the TE count file for each fastq file? I want to manually inspect the reads and see if they really are similar to TE sequences, but I can't do that at the moment.

Thank you!

hyunhwan-jeong commented 4 years ago

@juanb001 The function has not been implemented, but I can let you know we are working on it. I will update once we finished it.

Thank you,

Hyun-Hwan Jeong

juanb001 commented 4 years ago

Thanks for the update; look forward to it!