Possibly a stupid question but I can't find out in the documentation. May I ask what is the genome version SalmonTE is using for zebrafish? danRer7 or danRer10? (--reference dr).
What's more, how can I know the exact location of the repeats. It seems that SalmonTE only reports the repeat name. For example, after quantification, I found that BEL-40_DRe-LTR is activated in my sample and I would like to know the genomic location of BEL-40_DRe-LTR. I tried to compare with the repeatmarker but it looks like the name is not always the same.
Hello SalmonTE developers,
Possibly a stupid question but I can't find out in the documentation. May I ask what is the genome version SalmonTE is using for zebrafish? danRer7 or danRer10? (
--reference dr).What's more, how can I know the exact location of the repeats. It seems that SalmonTE only reports the repeat name. For example, after quantification, I found that BEL-40_DRe-LTR is activated in my sample and I would like to know the genomic location of BEL-40_DRe-LTR. I tried to compare with the repeatmarker but it looks like the name is not always the same.
Thank you very much for your help!
Best, Alice