hyunhwan-jeong
commented
1 year ago This was the sequence I used for the index
ctcgctgattgctagcacagcagtctgagatcaaactgcaaggc
ggcaacgaggctgggggaggggcgcccgccattgcccaggcttgcttaggtaaacaaagcagccgggaag
ctcgaactgggtggagcccaccacagctcaaggaggcctgcctgcctctgtaggctccacctctgggggc
agggcacagacaaacaaaaagacagcagtaacctctgcagacttaagtgtccctgtctgacagctttgaa
gagagcagtggttctcccagcacgcagctggagatctgagaacgggcagactgcctcctcaagtgggtcc
ctgacccctgacccccgagcagcctaactgggaggcaccccccagcaggggcacactgacacctcacacg
gcagggtattccaacagacctgcagctgagggtcctgtctgttagaaggaaaactaacaaccagaaagga
catctacaccgaaaacccatctgtacatcaccatcatcaaagaccaaaagtagataaaaccacaaagatg
gggaaaaaacagaacagaaaaactggaaactctaaaacgcagagcgcctctcctcctccaaaggaacgca
gttcctcaccagcaacagaacaaagctggatggagaatgattttgacgagctgagagaagaaggcttcag
acgatcaaattactctgagctacgggaggacattcaaaccaaaggcaaagaagttgaaaactttgaaaaa
aatttagaagaatgtataactagaataaccaatacagagaagtgcttaaaggagctgatggagctgaaaa
ccaaggctcgagaactacgtgaagaatgcagaagcctcaggagccgatgcgatcaactggaagaaagggt
atcagcaatggaagatgaaatgaatgaaatgaagcgagaagggaagtttagagaaaaaagaataaaaaga
aatgagcaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctg
aaagtgatgtggagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaa
tctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgagaaga
gcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagcca
gagagaaaggtcgggttaccctcaaaggaaagcccatcagactaacagcggatctctcggcagaaaccct
acaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttca
tatccagccaaactaagcttcataagtgaaggagaaataaaatactttatagacaagcaaatgctgagag
attttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcgctaaacatggaaaggaacaaccg
gtaccagccgctgcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaa
tgagcaaaatcaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaata
taaatggactaaattctgcaattaaaagacacagactggcaagttggataaagagtcaagacccatcagt
gtgctgtattcaggaaacccatctcacgtgcagagacacacataggctcaaaataaaaggatggaggaag
atctaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagacttta
aaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagagga
gctaactatcctaaatatttatgcacccaatacaggagcacccagattcataaagcaagtcctcagtgac
ctacaaagagacttagactcccacacattaataatgggagactttaacaccccactgtcaacattagaca
gatcaacgagacagaaagtcaacaaggatacccaggaattgaactcagctctgcaccaagcagacctaat
agacatctacagaactctccaccccaaatcaacagaatatacatttttttcagcaccacaccacacctat
tccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgtaaaagaacagaaattataacaa
actatctctcagaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaagccgctcaac
tacatggaaactgaacaacctgctcctgaatgactactgggtacataacgaaatgaaggcagaaataaag
atgttctttgaaaccaacgagaacaaagacaccacataccagaatctctgggacgcattcaaagcagtgt
gtagagggaaatttatagcactaaatgcctacaagagaaagcaggaaagatccaaaattgacaccctaac
atcacaattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataact
aaaatcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagct
ggttttttgaaaggatcaacaaaattgatagaccgctagcaagactaataaagaaaaaaagagagaagaa
tcaaatagacacaataaaaaatgataaaggggatatcaccaccgatcccacagaaatacaaactaccatc
agagaatactacaaacacctctacgcaaataaactagaaaatctagaagaaatggatacattcctcgaca
catacactctcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggctctgaaat
tgtggcaataatcaatagtttaccaaccaaaaagagtccaggaccagatggattcacagccgaattctac
cagaggtacaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcc
tccctaactcattttatgaggccagcatcattctgataccaaagccgggcagagacacaaccaaaaaaga
gaattttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatc
cagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttca
atatacgcaaatcaataaatgtaatccagcatataaacagagccaaagacaaaaaccacatgattatctc
aatagatgcagaaaaagcctttgacaaaattcaacaacccttcatgctaaaaactctcaataaattaggt
attgatgggacgtatttcaaaataataagagctatctatgacaaacccacagccaatatcatactgaatg
ggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccgctcctatt
caacatagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtattcaattagga
aaagaggaagtcaaattgtccctgtttgcagacgacatgattgtttatctagaaaaccccatcgtctcag
cccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatc
acaagcattcttatacaccaacaacagacaaacagagagccaaatcatgggtgaactcccattcacaatt
gcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaact
acaaaccactgctcaaggaaataaaagaggacacaaacaaatggaagaacattccatgctcatgggtagg
aagaatcaatatcgtgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaag
ctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagccc
gcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactata
ctacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacaga
acagagccctcagaaataatgccgcatatctacaactatctgatctttgacaaacctgagaaaaacaagc
aatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaa
actggatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacct
aaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaaggacttca
tgtccaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagag
cttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaacatgggagaaaattttcgca
acctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaa
caaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagc
caaaaaacacatgaagaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccactatgaga
tatcatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtg
gagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtg
gcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatataccca
aaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatag
caaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacac
catggaatactatgcagccataaaaaatgatgagttcatatcctttgtagggacatggatgaaattggaa
accatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtggga
attgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggtcgggg
gaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgcaccag
catggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtataat
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaataaaaaYou can find further information at https://github.com/hyunhwan-jeong/SalmonTE/blob/main/scripts/hs_origin.fa.
Thank you,
Hyun-Hwan Jeong
I am trying to pull out the sequence for L1HS from SalmonTE reference to see if it contains the full length of ORF. May I know how to approach it?
Thanks!