Hi, thank you for this great tool, however I keep getting an error with snakemake. Is it a problem with the version? - 8.20.5? Which version is compatible?
2024-09-29 14:01:46,298 Starting quantification mode
2024-09-29 14:01:46,298 Collecting FASTQ files...
2024-09-29 14:01:46,298 SalmonTE assumes that '/media/leo/SSD500/Analysis_ASD/Control' is a directory, and SalmonTE will search any FASTQ file in the directory.
2024-09-29 14:01:46,300 The input dataset is considered as a single-end dataset.
2024-09-29 14:01:46,300 Collected 19 FASTQ files.
2024-09-29 14:01:46,300 Quantification has been finished.
2024-09-29 14:01:46,300 Running Salmon using Snakemake
Traceback (most recent call last):
File "/home/leo/SalmonTE/./SalmonTE.py", line 295, in
run(args)
File "/home/leo/SalmonTE/./SalmonTE.py", line 246, in run
run_salmon(param)
File "/home/leo/SalmonTE/./SalmonTE.py", line 144, in run_salmon
snakemake.snakemake(
^^^^^^^^^^^^^^^^^^^
AttributeError: module 'snakemake' has no attribute 'snakemake'
Hi, thank you for this great tool, however I keep getting an error with snakemake. Is it a problem with the version? - 8.20.5? Which version is compatible?
2024-09-29 14:01:46,298 Starting quantification mode 2024-09-29 14:01:46,298 Collecting FASTQ files... 2024-09-29 14:01:46,298 SalmonTE assumes that '/media/leo/SSD500/Analysis_ASD/Control' is a directory, and SalmonTE will search any FASTQ file in the directory. 2024-09-29 14:01:46,300 The input dataset is considered as a single-end dataset. 2024-09-29 14:01:46,300 Collected 19 FASTQ files. 2024-09-29 14:01:46,300 Quantification has been finished. 2024-09-29 14:01:46,300 Running Salmon using Snakemake Traceback (most recent call last): File "/home/leo/SalmonTE/./SalmonTE.py", line 295, in
run(args)
File "/home/leo/SalmonTE/./SalmonTE.py", line 246, in run
run_salmon(param)
File "/home/leo/SalmonTE/./SalmonTE.py", line 144, in run_salmon
snakemake.snakemake(
^^^^^^^^^^^^^^^^^^^
AttributeError: module 'snakemake' has no attribute 'snakemake'