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hzi-bifo / RiboDetector

Accurate and rapid RiboRNA sequences Detector based on deep learning
GNU General Public License v3.0
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About read length #20

Closed gouwei1 closed 1 year ago

gouwei1 commented 2 years ago

Hi,

The raw data's read length are from 100 to 250, but the mean length are 148. Which one should be added after -l.

Best, Wei

dawnmy commented 2 years ago

I would suggest to use -l 148. It will be also fine to use -l 100. The final prediction will be nearly the same. With -l 100, the first 100bp will be used to determine whether the whole read is from rRNA. The output will be the whole read no matter which -l parameter is set.

gouwei1 commented 2 years ago

I'll have a try. Thanks for your reply!