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hzi-bifo / RiboDetector

Accurate and rapid RiboRNA sequences Detector based on deep learning
GNU General Public License v3.0
96 stars 16 forks source link

Retrive the filtered out sequences #38

Closed LeoVincenzi closed 1 year ago

LeoVincenzi commented 1 year ago

Hi dear developers, thanks for this interesting tools! I have a question about the possibility it give us: the output file is the fastq of the remaining sequences after rrna reads have been removed. I would like to know if there is the possibility to have in output the sequences that have been filtered out by the process. If there is, it would be fantastic.

Thanks! Leo

dawnmy commented 1 year ago

Glad that you found RiboDetector is useful for you. Yes, you can use -r parameter where you can specify the path for the output sequence file of detected rRNAs.

LeoVincenzi commented 1 year ago

Oh sorry, I completely missed that line in the guide. Thank you very much!!