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hzi-bifo / RiboDetector

Accurate and rapid RiboRNA sequences Detector based on deep learning
GNU General Public License v3.0
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RiboDetector for barcoded libraries #51

Closed mckellardw closed 2 months ago

mckellardw commented 2 months ago

I am working with spatial transcriptomics data (10x Genomics Visium, etc), where read 1 contains only barcode information and read 2 has the actual sequence. Could you add a flag to disable predictions on R1, but still filter the fastq based on the label predicted for R2?

dawnmy commented 2 months ago

Hi, we will consider adding this option in a future release but I am not sure when. For now, you can use the approach outlined here: https://github.com/hzi-bifo/RiboDetector/issues/41 to achieve this.

mckellardw commented 2 months ago

Thanks!