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i-Molecule / Eurecon

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Not working for stl objects #1

Open Noxx23 opened 1 year ago

Noxx23 commented 1 year ago

File "C:\Users\seanb\OneDrive\Documents\GitHub\Eurecon\eurecon.py", line 37, in main() File "C:\Users\seanb\anaconda3\lib\site-packages\click\core.py", line 1128, in call return self.main(args, kwargs) File "C:\Users\seanb\anaconda3\lib\site-packages\click\core.py", line 1053, in main rv = self.invoke(ctx) File "C:\Users\seanb\anaconda3\lib\site-packages\click\core.py", line 1395, in invoke return ctx.invoke(self.callback, ctx.params) File "C:\Users\seanb\anaconda3\lib\site-packages\click\core.py", line 754, in invoke return __callback(args, *kwargs) File "C:\Users\seanb\OneDrive\Documents\GitHub\Eurecon\eurecon.py", line 33, in main eurecon.start() File "C:\Users\seanb\OneDrive\Documents\GitHub\Eurecon\eurecon__init__.py", line 70, in start ensemble.generate_ensemble(self.stdout_mode) File "C:\Users\seanb\OneDrive\Documents\GitHub\Eurecon\eurecon\base\ensemble.py", line 200, in generate_ensemble new_conformation = self.generate_conformation(axis) File "C:\Users\seanb\OneDrive\Documents\GitHub\Eurecon\eurecon\utils\metrics.py", line 15, in wrapper result = func(args, kwargs) File "C:\Users\seanb\OneDrive\Documents\GitHub\Eurecon\eurecon\base\ensemble.py", line 121, in generate_conformation conformation = np.sum( File "<__array_function__ internals>", line 200, in sum File "C:\Users\seanb\anaconda3\lib\site-packages\numpy\core\fromnumeric.py", line 2324, in sum return _wrapreduction(a, np.add, 'sum', axis, dtype, out, keepdims=keepdims, File "C:\Users\seanb\anaconda3\lib\site-packages\numpy\core\fromnumeric.py", line 86, in _wrapreduction return ufunc.reduce(obj, axis, dtype, out, passkwargs) ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (2,) + inhomogeneous part.

Noxx23 commented 1 year ago

I tried with your test.stl and the easy command that you given.

i-Molecule commented 1 year ago

I cannot reproduce this issue, the output is:

python eurecon.py -r 0.5 -p 1 -a resources/tesselation_vertices_layer_0.txt -i examples/test.stl -o examples/test_output Augmenting examples/test.stl object | Type: Mesh | RMSD Value: 0.5 Generating conformations: 100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 20/20 [00:00<00:00, 8152.99it/s] Writing conformations: 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 20/20 [00:00<00:00, 1364.64it/s]