i2b2-tranSMART / i2b2transmart-quick-start

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Data Upload Fails on 18-1 #1

Open BenjaminHCCarr opened 6 years ago

BenjaminHCCarr commented 6 years ago

On a fresh deployment of 18-1 Data Upload Fails:

https://{IP}/transmart/uploadData/index

Error 500: Internal Server Error
URI
/transmart/uploadData/index
Class
java.lang.IllegalArgumentException
Message
Module [uploadDataTab] depends on resource [/js/browserDetect.js] but the file cannot be found
Trace
    Line | Method
->>  530 | doFilter  in /uploadData/uploadData.gsp
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 

Caused by GrailsTagException: Error executing tag <r:layoutResources>: Module [uploadDataTab] depends on resource [/js/browserDetect.js] but the file cannot be found
->>   28 | doCall    in /WEB-INF/grails-app/views/uploadData/uploadData.gsp
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 

Caused by IllegalArgumentException: Module [uploadDataTab] depends on resource [/js/browserDetect.js] but the file cannot be found
->>  507 | doCall    in org.grails.plugin.resource.ResourceTagLib$_closure10

root@ip-AWS centos]# docker container ls
\CONTAINER ID        IMAGE                                                                        COMMAND                  CREATED             STATUS              PORTS                                      NAMES
f5de104f3123        dbmi/irct:1.4.2                                                              "/opt/jboss/wildfl..."   12 hours ago        Up 12 hours         8080/tcp                                   quickstart_irct_1
e36e51fedfd5        dbmi/i2b2transmart:release-18.1-beta-1                                       "./bin/catalina.sh..."   12 hours ago        Up 12 hours         8080/tcp                                   quickstart_transmart_1
02d78f0cbf35        redis:alpine                                                                 "docker-entrypoint..."   12 hours ago        Up 12 hours         6379/tcp                                   quickstart_redis_1
b0483e99ff17        dbmi/nginx:i2b2tm.release-18.1                                               "/docker-entrypoin..."   12 hours ago        Up 11 hours         0.0.0.0:80->80/tcp, 0.0.0.0:443->443/tcp   quickstart_nginx_1
108202b30d18        dbmi/i2b2-wildfly:1.7.09c                                                    "/opt/jboss/wildfl..."   12 hours ago        Up 12 hours         8080/tcp, 9090/tcp                         quickstart_i2b2-wildfly_1
32ec2f1926bc        dbmi/irct-db:mysql.5.7.22-irct.1.4.2-i2b2-nhanes                             "docker-entrypoint..."   12 hours ago        Up 12 hours         0.0.0.0:3306->3306/tcp                     quickstart_irctdb_1
21ff155f6ca0        dbmi/rserve:3.2.1-tm.release-18.1                                            "R CMD Rserve.dbg ..."   12 hours ago        Up 12 hours         6311/tcp                                   quickstart_rserve_1
044ec107d5e4        dbmi/solr:4.5.0-tm.release-18.1                                              "java -jar start.jar"    12 hours ago        Up 12 hours         8983/tcp                                   quickstart_solr_1
6fcca995a6a1        rabbitmq:alpine                                                              "docker-entrypoint..."   12 hours ago        Up 12 hours         4369/tcp, 5671-5672/tcp, 25672/tcp         quickstart_rabbitmq_1
85cc7fbe5417        dbmi/i2b2transmart-db:oracle.12.2.0.1-ee-i2b2.1.7.09-tm.release-18.1-v.1.0   "/bin/sh -c 'exec ..."   12 hours ago        Up 12 hours         0.0.0.0:1521->1521/tcp, 5500/tcp           quickstart_db_1
recursethis commented 6 years ago

@BenjaminHCCarr this issue is resolved with the latest from master, however, as it may seem like a cruel joke that I'm playing on you (I'm not), I've disabled the Upload Data tab, as currently, we have not set any resources to implement it. You'll notice in the GWAS tab there are no studies, and there are no studies that can be selected in the Upload Data.

I don't believe any of our existing in-house production environments has this feature enabled, but don't quote me on that.

Our primary focus has been on the Dataset Explorer. I feel before you go down the rabbit hole of using Upload Data, that we confirm its implementation and test it as a feature before enabling it.

Please make a feature request, to which I will assign to @namdets, so he can appropriately prioritize it. It would be helpful if you can offer details on your intended use to help with our requirements for implementation.

recursethis commented 6 years ago

I've re-enabled the Data Upload on the latest transmart service. It is not currently resolved, but the issue has been prioritized.