iBEAT-V2
commented
3 weeks ago which label?
Open jessyblues opened 3 weeks ago
iBEAT-V2
commented
3 weeks ago which label?
jessyblues
commented
3 weeks ago I applied for the ADNI and OASIS brain segmentations processed by iBEAT, but I'm confused by the ROI index. The .nii.gz file is like
Every voxel belongs to a ROI represented by the value as the index. But I have no idea the name of the ROI of each index.
iBEAT-V2
commented
3 weeks ago | 1 | 3rd Ventricle |
|---|---|
| 2 | 4th Ventricle |
| 3 | Left Accumbens Area |
| 4 | Right Accumbens Area |
| 5 | Left Amygdala |
| 6 | Right Amygdala |
| 7 | Brain Stem |
| 8 | Left Caudate |
| 9 | Right Caudate |
| 10 | Left Cerebellum Exterior |
| 11 | Right Cerebellum Exterior |
| 12 | Left Cerebellum White Matter |
| 13 | Right Cerebellum White Matter |
| 14 | Left Cerebral White Matter |
| 15 | Right Cerebral White Matter |
| 16 | CSF |
| 17 | Left Hippocampus |
| 18 | Right Hippocampus |
| 19 | Left Inf Lat Vent |
| 20 | Right Inf Lat Vent |
| 21 | Left Lateral Ventricle |
| 22 | Right Lateral Ventricle |
| 23 | Left Pallidum |
| 24 | Right Pallidum |
| 25 | Left Putamen |
| 26 | Right Putamen |
| 27 | Left Thalamus Proper |
| 28 | Right Thalamus Proper |
| 29 | Left Ventral DC |
| 30 | Right Ventral DC |
| 31 | Cerebellar Vermal Lobules I-V |
| 32 | Cerebellar Vermal Lobules VI-VII |
| 33 | Cerebellar Vermal Lobules VIII-X |
| 34 | Right Basal Forebrain |
| 35 | Left Basal Forebrain |
| 36 | Left ACgG anterior cingulate gyrus |
| 37 | Right ACgG anterior cingulate gyrus |
| 38 | Left AIns anterior insula |
| 39 | Right AIns anterior insula |
| 40 | Left AOrG anterior orbital gyrus |
| 41 | Right AOrG anterior orbital gyrus |
| 42 | Left AnG angular gyrus |
| 43 | Right AnG angular gyrus |
| 44 | Left Calc calcarine cortex |
| 45 | Right Calc calcarine cortex |
| 46 | Left CO central operculum |
| 47 | Right CO central operculum |
| 48 | Left Cun cuneus |
| 49 | Right Cun cuneus |
| 50 | Left Ent entorhinal area |
| 51 | Right Ent entorhinal area |
| 52 | Left FO frontal operculum |
| 53 | Right FO frontal operculum |
| 54 | Left FRP frontal pole |
| 55 | Right FRP frontal pole |
| 56 | Left FuG fusiform gyrus |
| 57 | Right FuG fusiform gyrus |
| 58 | Left GRe gyrus rectus |
| 59 | Right GRe gyrus rectus |
| 60 | Left IOG inferior occipital gyrus |
| 61 | Right IOG inferior occipital gyrus |
| 62 | Left ITG inferior temporal gyrus |
| 63 | Right ITG inferior temporal gyrus |
| 64 | Left LiG lingual gyrus |
| 65 | Right LiG lingual gyrus |
| 66 | Left LOrG lateral orbital gyrus |
| 67 | Right LOrG lateral orbital gyrus |
| 68 | Left MCgG middle cingulate gyrus |
| 69 | Right MCgG middle cingulate gyrus |
| 70 | Left MFC medial frontal cortex |
| 71 | Right MFC medial frontal cortex |
| 72 | Left MFG middle frontal gyrus |
| 73 | Right MFG middle frontal gyrus |
| 74 | Left MOG middle occipital gyrus |
| 75 | Right MOG middle occipital gyrus |
| 76 | Left MOrG medial orbital gyrus |
| 77 | Right MOrG medial orbital gyrus |
| 78 | Left MPoG postcentral gyrus medial segment |
| 79 | Right MPoG postcentral gyrus medial segment |
| 80 | Left MPrG precentral gyrus medial segment |
| 81 | Right MPrG precentral gyrus medial segment |
| 82 | Left MSFG superior frontal gyrus medial segment |
| 83 | Right MSFG superior frontal gyrus medial segment |
| 84 | Left MTG middle temporal gyrus |
| 85 | Right MTG middle temporal gyrus |
| 86 | Left OCP occipital pole |
| 87 | Right OCP occipital pole |
| 88 | Left OFuG occipital fusiform gyrus |
| 89 | Right OFuG occipital fusiform gyrus |
| 90 | Left OpIFG opercular part of the inferior frontal gyrus |
| 91 | Right OpIFG opercular part of the inferior frontal gyrus |
| 92 | Left OrIFG orbital part of the inferior frontal gyrus |
| 93 | Right OrIFG orbital part of the inferior frontal gyrus |
| 94 | Left PCgG posterior cingulate gyrus |
| 95 | Right PCgG posterior cingulate gyrus |
| 96 | Left PCu precuneus |
| 97 | Right PCu precuneus |
| 98 | Left PHG parahippocampal gyrus |
| 99 | Right PHG parahippocampal gyrus |
| 100 | Left PIns posterior insula |
| 101 | Right PIns posterior insula |
| 102 | Left PO parietal operculum |
| 103 | Right PO parietal operculum |
| 104 | Left PoG postcentral gyrus |
| 105 | Right PoG postcentral gyrus |
| 106 | Left POrG posterior orbital gyrus |
| 107 | Right POrG posterior orbital gyrus |
| 108 | Left PP planum polare |
| 109 | Right PP planum polare |
| 110 | Left PrG precentral gyrus |
| 111 | Right PrG precentral gyrus |
| 112 | Left PT planum temporale |
| 113 | Right PT planum temporale |
| 114 | Left SCA subcallosal area |
| 115 | Right SCA subcallosal area |
| 116 | Left SFG superior frontal gyrus |
| 117 | Right SFG superior frontal gyrus |
| 118 | Left SMC supplementary motor cortex |
| 119 | Right SMC supplementary motor cortex |
| 120 | Left SMG supramarginal gyrus |
| 121 | Right SMG supramarginal gyrus |
| 122 | Left SOG superior occipital gyrus |
| 123 | Right SOG superior occipital gyrus |
| 124 | Left SPL superior parietal lobule |
| 125 | Right SPL superior parietal lobule |
| 126 | Left STG superior temporal gyrus |
| 127 | Right STG superior temporal gyrus |
| 128 | Left TMP temporal pole |
| 129 | Right TMP temporal pole |
| 130 | Left TrIFG triangular part of the inferior frontal gyrus |
| 131 | Right TrIFG triangular part of the inferior frontal gyrus |
| 132 | Left TTG transverse temporal gyrus |
| 133 | Right TTG transverse temporal gyrus |
I wonder whether there is a label name and index reference table? I have went through the paper but the description is vague. Maybe it's in the handbook but I can't find one.