Running iDEP from user's computer using runGitHub

iDEP-SDSU / idep

Integrated Differential Expression and Pathway analysis

http://ge-lab.org/idep

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Running iDEP from user's computer using runGitHub #2

Closed gexijin closed 1 year ago

gexijin commented 7 years ago

Put databases and flat files on servers and enable users to run iDEP on their own computer from RStudio using runGitHub such as:

runGitHub("shiny_example", "rstudio")

kruny1001 commented 7 years ago

I create another repository for idep-rstudio. You can check: https://github.com/iDEP-SDSU/iDep-rstudio

shiny::runGitHub("iDep-rstudio", "iDEP-SDSU")

For running idep-rstudio, execute above code from rStudio.

I also attached install.R script file in order to preinstall required dataset and unzip.

> rscript install.R

You can run above command line from cmd (windows) or terminal (linux or mac)

mostafaabuzaid25 commented 6 years ago

hi i am in china i want install standalone version of idep on my laptop my os is win 10 i used ubuntu terminal not work i used docker-toolbox it take along time to pull the configuration can you help me please what should i do.

gexijin commented 6 years ago

Currently, we does not support running iDEP in stand alone mode. We may offer this in the future via consulting or other arrangements, which might not be free.