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iDEP-SDSU / idep

Integrated Differential Expression and Pathway analysis
http://ge-lab.org/idep
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how can we have a color key scale in correlation matrix and K-means clustering? #203

Open kamalmdmostafa opened 1 year ago

kamalmdmostafa commented 1 year ago

Is there any way to add a color key in the correlation matrix and K-means clustering figures?

EricTulowetzke commented 1 year ago

@kamalmdmostafa We are currently doing a refactoring of iDEP to be a shiny package. Meaning hopefully users we be able to run locally and developing is easier.

I can add this to new GitHub repo and look into it. Do you mind if I send you examples of pictures later this weekend to get your input

kamalmdmostafa commented 1 year ago

@EricTulowetzke Thank you for your response. I run locally in R-studio.

Please send me pictures, and I would be happy to give feedback. I wish iDEP had a few other features, for example, Time series analysis using fuzzy-c means clustering. Clustering with average replicates Line graphs of the heatmap clusters with centroid Option to choose LenghtScaled TPM along with the CPM-based analysis.

iDEP is an excellent tool to save time and complexity for us we-lab researchers.

Appreciate it.

gexijin commented 1 year ago

Please give our new version a try here