iGEM-Bettencourt-2021 / Wet-Lab

Welcome to the Wet-Lab GitHub page for iGEM 2021 Bettencourt team! You will find there all the relevant informations and links related to the experimental design and procedures of this project from ideas brainstorming to experimental setups and protocols.
3 stars 0 forks source link

Biosensors (Sabu et al 2019), Quorum Sensing (de Kievit et al. 2000) #28

Closed JulietteB-cri closed 3 years ago

JulietteB-cri commented 3 years ago

Sabu, C., Henna, T. K., Raphey, V. R., Nivitha, K. P., & Pramod, K. (2019). Advanced biosensors for glucose and insulin. Biosensors and Bioelectronics, 141, 111201.

24/03/2021

Review of the different types of biosensors for glucose and insulin continuous monitoring.

Glucose and insulin are two central indicators to monitor & control the diabete - a chronic metabolic disorder. Insulin has a key role in glucose metabolism. Main way to diagnose it is to estimate the glucose concentration in the blood.

An “uncountable number of biosensors” have been developed to monitor continuously glucose and insulin levels.

Different types of glucose biosensor:

Capture

Note. A lot has already been done in this field -and some new nanotechnologies are being developed, are really precise, reliable & efficient. It could be interesting some applications of multisensors to another field (e.g plant diseases)

JulietteB-cri commented 3 years ago

Meile, S., Kilcher, S., Loessner, M. J., & Dunne, M. (2020). Reporter Phage-Based Detection of Bacterial Pathogens: Design Guidelines and Recent Developments. Viruses, 12(9), 944.

JulietteB-cri commented 3 years ago

Bacterial Quorum Sensing in Pathogenic Relationships

Teresa R. de Kievit, Barbara H. Iglewski

(https://iai.asm.org/content/68/9/4839#sec-1)

24/03/2021

This review is studying some pathogenic relationships focusing on bacteria with a quorum-sensing system.

Quorum sensing (QS) Cell-to-cell communication so-called quorum-sensing can be defined as the capacity to detect the cell density and as a response to regulate gene expression. Many species of bacteria has this system, for example Gram-negative bacteria (below).

Gram-negative bacteria They are mostly using N-acyl homoserine lactones (AHL) as a signalling molecule. ==> when AHL in high concentration, they can induce gene expression by binding to and activating a transcriptional activator (R protein)

EXPLOITING BACTERIAL QUORUM SENSING

CONCLUSION:

JulietteB-cri commented 3 years ago

https://mmbr.asm.org/content/mmbr/77/1/73.full.pdf

Exploiting Quorum Sensing To Confuse Bacterial Pathogens (LaSarre et al. 2013)

JulietteB-cri commented 3 years ago

Chan, C., Lee, J., Cameron, D. et al. 'Deadman' and 'Passcode' microbial kill switches for bacterial containment. Nat Chem Biol 12, 82–86 (2016).

Link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4718764/pdf/nihms732216.pdf

One sentence summary: The authors developed two genetic gene circuits able to kill efficiently E.coli, they can be reprogrammable to for example modify their killing mechanism.

Deadman kill switch

Goal: design a system that can passively activate a biocontainment system (kill switch) for engineered microbes.

How does it work? It uses a small molecule-binding TF to create a survival state i.e where a specific environmental signal will determine/influences the repression of toxin production. When the environmental signal is lost, the system switches to the death mode (production of toxin killing the cell). It uses toggle switch architecture (LacI and TetR mutual repression system) to make the kill switch more robust.

Details & Construction Alteration of the RBS strengths of LacI and TetR in order to favour TetR expression in a single-copy plasmid. aTc - TetR inhibitor- is needed to maintain the survival state, it will be used to block toxin expression (and therefore cell death)

image This induced death was increased by combining control of toxin expression and targeting essential protein degradation.

Passcode kill switch

Goal: Construct a hybrid transcription factor design to extend the modularity of the system.

How does it work? The systems use hybrid LacI-GalR family TFs to expand the range and complexity of environmental signals used to define biocontainment conditions.

- Details & Construction

  1. Building and generating hybrid TFs Indentified the boundaries of the environmental sensing modules (ESMs) and DNA recognition modules (DRMs) found in the LacI-GalR family. They then created hybrid TFs that will regulate the promoter by using a small-molecule input defined by the hybrid's ESM. image

Long-term circuit stability

Both kill switch systems showed reduced killing efficiency over time. (escaped ones mainly showed inactivating mutations in the toxin genes). Proposition of the authors adding some additional killing systems into the circuits could reduce the decrease in killing efficiency.