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iGEM-Engineering / iGEM-distribution

Repository for collective design of an iGEM DNA distribution
https://igem-distribution.readthedocs.io
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fixing gb files in E coli toolkit #277

Closed vinoo-igem closed 2 years ago

vinoo-igem commented 2 years ago

manually removed linebreak before "polymerase" lines 14-15 / 15-16, depending on files, from all .gb files in E coli toolkit.

vinoo-igem commented 2 years ago

Not sure why this is still throwing this error, as I believe I removed the linebreak from every file. @jakebeal I may be looking at the log wrong, but is there a way to determine which file is being referenced?

ValueError: Problem with 'terminator' feature: 1..2446 /label="T7 terminator" /note="transcription terminator for bacteriophage T7 RNA

I also wanted to flag that all genbank files (at least form a cursory glance) have the terminator feature duplicated, and wrong, with the first T7 terminator spanning the entire plasmid.

terminator 1..2789 /label="T7 terminator" /note="transcription terminator for bacteriophage T7 RNA polymerase" terminator 826..873 /label="T7 terminator" /note="transcription terminator for bacteriophage T7 RNA polymerase"