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iTCf / PCIcalc

The module allows to compute the Perturbational Complexity (LZ) of Casarotto et al. 2016 (Casarotto S, Comanducci A, Rosanova M, Sarasso S, Fecchio M, Napolitani M, et al. Stratification of unresponsive patients by an independently validated index of brain complexity: Complexity Index. Annals of Neurology. 2016;80: 718–729) and it will gradually be upgraded to the newer and more stable versions.
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Missing `wake.mat` and `sleep.mat` files #1

Closed fdeage closed 1 year ago

fdeage commented 1 year ago

Hi, I'm trying to run the PCI notebook but the two Matlab files seem missing. Is there any way to find them?

ezemikulan commented 1 year ago

Hi, sorry about the delay. @thierrynieus do you know where is the data?

fdeage commented 1 year ago

Thanks @ezemikulan for the reply, but in the meantime I found another PCI notebook :)

thierrynieus commented 1 year ago

Hi, I just noticed the mat files are indeed missing, though they were part of the corresponding hbp collab. I can try to retrieve them from my backups and/or see if I can still access the old hbp collab. However if you are now on a new notebook it is ok. Be aware that some notebooks (not the one released from Massimini's lab) may contain bugs (e.g. wrong normalization, incorrect LZ78 algorithm, complexity is computed with LZ77 and the two yield remarkable differences). Best

On Mon, Nov 14, 2022 at 2:59 PM Félix Déage @.***> wrote:

Thanks @ezemikulan https://github.com/ezemikulan for the reply, but in the meantime I found another PCI notebook :)

— Reply to this email directly, view it on GitHub https://github.com/iTCf/PCIcalc/issues/1#issuecomment-1313754314, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFO6S3DSVDBMT2YVAMAL5JTWIJAU3ANCNFSM6AAAAAARPDC6HE . You are receiving this because you were mentioned.Message ID: @.***>

fdeage commented 1 year ago

Thanks. I found a piece of code called PCI_v2, at https://gitlab.ebrains.eu/kancourt/tvb-adex-showcase3-git/-/blob/master/pci_v2.py, which includes the sort_binJ and source_entropy functions.

thierrynieus commented 1 year ago

Hi Felix, I have now: 1) provided a link to the wake.mat and sleep.mat (500 MB too much for github) 2) added some lines in the readme file to redirect anyone to the more recent examples we released for the Human Brain Project (SGA2). https://github.com/thierrynieus/PerturbationalComplexityIndex The PCI_v2 file is ok, you can go with it! Best Thierry

On Tue, Nov 15, 2022 at 11:45 AM Félix Déage @.***> wrote:

Thanks. I found a piece of code called PCI_v2, at https://gitlab.ebrains.eu/kancourt/tvb-adex-showcase3-git/-/blob/master/pci_v2.py, which includes the sort_binJ and source_entropy functions.

— Reply to this email directly, view it on GitHub https://github.com/iTCf/PCIcalc/issues/1#issuecomment-1315128073, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFO6S3AIWSEIGP7GA2T7UE3WINSV7ANCNFSM6AAAAAARPDC6HE . You are receiving this because you were mentioned.Message ID: @.***>

fdeage commented 1 year ago

Hi Thierry, sounds perfect, thanks!