I would like to ask how do you draw the end of a reaction (arc) that it is displayed as attached to an element (process or macromolecule). As in the code it states that there is gap between start/end of arc and the element is it attached.
Please see coordiantes of arcs/elements from the attached model:
catalysis end arc is y="314.2858246181238", while process y="317.85714285714283".
There is ~3.5 gap. Is 3.5 the diameter/radius of the circle?
Similar 'gap' is between consumption (arc start x="410.625") and macromolecule A (x="410"="350+60")
macromolecule B (x="655") and production end x="651.25" - the difference 3.75 is the height of the triangle (arrow)?
Please advise how do you define start/end of arc so the ends of arc (with arrow/circle) are directly attached to the element despite the "gap".
There exists a similar issue here. Probably, there are bugs on exporting the end points of some edge types. I am not sure whether there exists a specific pattern for the gap values, this needs further investigation.
Model exported as sbgn from newt here: coords-check.sbgn.zip
I would like to ask how do you draw the end of a reaction (arc) that it is displayed as attached to an element (process or macromolecule). As in the code it states that there is gap between start/end of arc and the element is it attached.
Please see coordiantes of arcs/elements from the attached model:
Please advise how do you define start/end of arc so the ends of arc (with arrow/circle) are directly attached to the element despite the "gap".
coordinates of my sbgn model: