Clean code and dependencies

[hasanbalci]

After major code-related issues are solved, let's clean the code, remove commented parts and console.log statements, remove unnecessary dependencies from package.json etc. so that we leave a decent coding environment for the maintainers.

[YusufZiyaOzgul]

@hasanbalci @ugurdogrusoz cleanup is done.

[hasanbalci]

• Are we using the following files:
  • syblars_error.log file in root folder
  • main.menu.js in src folder
  • stylesheetNewt.js in src folder
• There are some variables named as "syblars" in public/js/main.menu.js file. Can we change them to "sybvals"?
• I also see some commented lines especially in src/index.js and public/js/main.menu.js (like here and here)) and multiple consecutive empty lines (like here). Can you please remove them?
• I also see sbgnml-to-cytoscape as a dependency in package.json. I guess we're not using it, are we?

[YusufZiyaOzgul]

• Are we using the following files:

  • syblars_error.log file in root folder
  • main.menu.js in src folder
  • stylesheetNewt.js in src folder

  • There are some variables named as "syblars" in public/js/main.menu.js file. Can we change them to "sybvals"?

  • I also see some commented lines especially in src/index.js and public/js/main.menu.js (like here and here)) and multiple consecutive empty lines (like here). Can you please remove them?

  • I also see sbgnml-to-cytoscape as a dependency in package.json. I guess we're not using it, are we?

@hasanbalci I consider it again and remove unnecessary parts mentioned above.