Missing coordinates for empty set nodes in resulting SBGN file

iVis-at-Bilkent / sybvals

SyBValS: Systems Biology Validation Service

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Missing coordinates for empty set nodes in resulting SBGN file #38

Closed hasanbalci closed 1 month ago

hasanbalci commented 2 months ago

In sample 2, when we resolve errors and separate empty set (source and sink) nodes and then download the resulting SBGNML file, empty set nodes don't have coordinates. If we load it to Newt, we cannot see those nodes.

YusufZiyaOzgul commented 1 month ago

@hasanbalci @ugurdogrusoz now, source and sink nodes have position. This bug occurs as they get undefined values for their x and y coordinates. Now, they have true values.