iaconogi bigSCale2 issues

iaconogi / bigSCale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

101 stars 38 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Update Functions.R

#38 ManosPapadakis95 opened 1 year ago
0
rowSort' is not an exported object from 'namespace:Rfast

#37 faeneeR opened 1 year ago
2
Error in Rfast::rowVars

#36 Zhangruiqi111 closed 1 year ago
2
Can I apply infercnv on iCells?

#35 voluptatis opened 3 years ago
0
Using raw UMI counts in bigscale

#34 Adarsh931 opened 3 years ago
0
Data normalization

#33 am-9 closed 4 years ago
1
How can I get the cell information after iCells() downsample process?

#32 xujingmei111 closed 4 years ago
3
Error: vector memory exhausted (limit reached?)

#31 skim245 closed 4 years ago
1
Bigscale Repo removed

#30 rahulbhadani closed 4 years ago
1
Could bigscale2 export gene clusters or gene modules after analyzing GRN?

#29 zehualilab closed 4 years ago
2
Error at clustering stage

#28 waseemabbas05 closed 4 years ago
3
construct Gene Regulatory Networks for other species SC data

#27 ChengTao2017 closed 4 years ago
2
running function bigscale: Error in vector("list", tot.clusters * tot.clusters) : vector size cannot be infinite

#26 zehualilab closed 4 years ago
12
Failed to install 'bigSCale'

#25 MingwuDuan closed 4 years ago
1
Correlation matrix and the list of genes with centrality from bigSCale2

#24 biobug16 closed 4 years ago
1
Network using non-Ensembl/-symbol gene names

#23 pburnham50 closed 4 years ago
3
Using a singleCellExperiment type object converted from a Seurat type causes bigscale() to error out.

#22 eregenyi closed 4 years ago
3
Critical value way too high (1.02513e+10): Stopping the analysis while performing compute.distance under compute.network

#21 biobug16 closed 4 years ago
1
Error in iCells.simple: object 'intermediate' not found

#20 alexandruioanvoda closed 5 years ago
3
libv8 library dependency installation difficulty

#19 alexandruioanvoda closed 5 years ago
2
Visualization of the regulatory network

#18 biobug16 closed 5 years ago
1
Fixed recursive clustering log

#17 JasonLiZhou opened 5 years ago
0
Object 'out' not found when tweaking previous network

#16 JasonLiZhou closed 5 years ago
2
Error in cutree(ht, h = max(ht$height) * progressive.depth[k]/100) : the 'height' component of 'tree' is not sorted (increasingly)

#15 biobug16 closed 5 years ago
5
compute.network error: Error in smooth.spline(x = sLa$x[!is.na(movSD)], y = movSD[!is.na(movSD)], : 'tol' must be strictly positive and finite

#14 biobug16 closed 5 years ago
4
bigSCale2 considers data only from 5000 cells

#13 biobug16 closed 5 years ago
5
Analyzing 10X single cell data for regulatory network

#12 biobug16 closed 5 years ago
2
0 nodes and 0 edges after GO filtering

#11 biobug16 closed 5 years ago
4
Fixed recursive clustering log in Line 1516 & Subset lib.size in Line 2551

#10 JasonLiZhou closed 5 years ago
3
compute.network error

#9 biobug16 closed 5 years ago
4
raw fastq

#8 biobug16 closed 5 years ago
5
Input file format for bigSCale2

#7 biobug16 closed 5 years ago
4
Fixed duplicate word on paragraph 127

#6 kant closed 5 years ago
0
compute.network error "modality argument missing"

#5 dpcook closed 5 years ago
2
Memory issue (vector memory exhausted) with very small dataset, inside iCell

#4 alexandruioanvoda closed 5 years ago
4
viewSignatures-Error in x - a

#3 bioguy2018 closed 5 years ago
8
GRN step error: dimnames applied to non-array

#2 cflerin closed 5 years ago
2
How can we obtain the index cells?

#1 alexandruioanvoda closed 5 years ago
2