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iacopy
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RCSB-Sync
Download structures from RCSB PDB database and keep the local directory updated
MIT License
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115 download cif files if pdb are not available
#118
iacopy
closed
2 weeks ago
1
116 fix lint errors
#117
iacopy
closed
2 weeks ago
2
Fix lint errors
#116
iacopy
closed
2 weeks ago
0
Download CIF files if PDB are not available
#115
iacopy
closed
2 weeks ago
0
Create JSON queries from list of genes
#114
iacopy
closed
2 weeks ago
1
Create genes queries
#113
iacopy
closed
2 weeks ago
0
ci: add create-executables.yml
#112
iacopy
closed
11 months ago
2
project,pdbparser: sortable date on pdb files csv list
#111
iacopy
closed
12 months ago
2
Sortable date on pdb files csv list
#110
iacopy
closed
12 months ago
0
Refactor pdbparser
#109
iacopy
closed
1 year ago
1
Fix and improve pdbparser
#108
iacopy
closed
1 year ago
0
download,project: implement --title-section-only option
#107
iacopy
closed
1 year ago
2
105 rename db summary txt to readme md
#106
iacopy
closed
1 year ago
2
Rename db_summary.txt to README.md
#105
iacopy
closed
1 year ago
0
ci: add cloc.yml
#104
iacopy
closed
1 year ago
1
Add GitHub actions for lines of code count
#103
iacopy
closed
1 year ago
0
101 add columns to files csv with pdbparser
#102
iacopy
closed
1 year ago
2
Add columns to files csv with pdbparser
#101
iacopy
closed
1 year ago
0
build(deps): bump urllib3 from 1.26.12 to 1.26.17
#100
dependabot[bot]
closed
1 year ago
1
build(deps): bump pygments from 2.13.0 to 2.15.0
#99
dependabot[bot]
closed
1 year ago
0
build(deps): bump requests from 2.28.1 to 2.31.0
#98
dependabot[bot]
closed
1 year ago
0
build(deps): bump markdown-it-py from 2.1.0 to 2.2.0
#97
dependabot[bot]
closed
1 year ago
1
95 sort pdb ids before saving
#96
iacopy
closed
1 year ago
2
Sort PDB ids before saving
#95
iacopy
closed
1 year ago
0
Update README.md: remove emojis
#94
iacopy
closed
1 year ago
2
92 save summary
#93
iacopy
closed
1 year ago
2
Save summary
#92
iacopy
closed
1 year ago
0
Metadata-sync
#91
iacopy
closed
1 year ago
0
build(deps): bump certifi from 2022.9.24 to 2023.7.22
#90
dependabot[bot]
closed
1 year ago
0
88 fix tests after pagination update
#89
iacopy
closed
1 year ago
2
Fix tests after pagination update
#88
iacopy
closed
1 year ago
0
86 commit pdb ids of model organisms
#87
iacopy
closed
1 year ago
2
Commit PDB ids of model organisms
#86
iacopy
closed
12 months ago
0
README: fix JSON indentation and add language specification
#85
iacopy
closed
1 year ago
0
Fix JSON in the README
#84
iacopy
closed
1 year ago
0
Fix error 400 due to pagination limit
#83
iacopy
closed
1 year ago
2
Fix pagination limit
#82
iacopy
closed
1 year ago
0
Uniprot
#81
iacopy
closed
1 year ago
1
Create bash script to download files
#80
iacopy
closed
1 year ago
2
Create simple bash script to download files
#79
iacopy
closed
1 year ago
0
Store the ids retrieved from RCSB-PDB
#78
iacopy
closed
1 year ago
2
Save the lists of ids returned by queries
#77
iacopy
closed
1 year ago
0
70 yaml to rcsbquery
#76
iacopy
closed
1 year ago
2
Get and log PDB title during download
#75
iacopy
closed
1 year ago
2
experimental: get pdb titles during download
#74
iacopy
closed
1 year ago
0
72 improve download logging
#73
iacopy
closed
1 year ago
2
Improve download logging
#72
iacopy
closed
1 year ago
0
First logging system
#71
iacopy
closed
1 year ago
2
yaml to rcsbquery
#70
iacopy
closed
1 year ago
0
68 ci fixup lint
#69
iacopy
closed
1 year ago
2
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