Trouble using/downloading bio

[Kgolden237]

I am following along the Biostar Handbook.

I did 'pip install bio --upgrade' (with and without upgrade) and it says requirement already satisfied. But when I try to use the command is doesn't work.

$ bio fetch NC_045512 Command 'bio' not found, did you mean: command 'bip' from deb bip (0.9.3-1) command 'gio' from deb libglib2.0-bin (2.72.4-0ubuntu2.2) command 'fio' from deb fio (3.28-1) command 'pio' from deb platformio (4.3.4-2) command 'biom' from deb python3-biom-format (2.1.10-3ubuntu1) command 'rio' from deb rio (1.07-14ubuntu1) command 'tio' from deb tio (1.32-1)

[ialbert]

Is the environment active?

I have just tried out the install with a test environment:

conda create -y -n test python=3.10
conda activate test
pip install bio
bio

and it all worked. Give this a go and see if it works, that will tell you some things.

[Kgolden237]

Thank you that worked!