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ialbert / genescape-central

Gene Ontology subgraph visualizations
MIT License
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Comparing Gene List #16

Open sridhar0605 opened 3 months ago

sridhar0605 commented 3 months ago

This is possibly a feature-request: Is there a way user can compare two different Gene list? Currently this seems to be a missing feature in most GO ontology tools.

ialbert commented 3 months ago

I am looking to add new features using the same API and libraries, but would probably be a new and different shiny app and new paper. I have been thinking about a similar problem, but the first is step is to come up with a graph similarity metric that could quantify to subtrees and explain how they overlap.

sridhar0605 commented 3 months ago

Perhaps, a simple jaccard similarity to start with? source

ialbert commented 3 months ago

Interesting writeup, I have to study it more, to see how it applies to GO graphs