If reads are mapped, but no contig is assembled, use the mapped reads for the next mapping step

ibest / ARC

Assembly by Reduced Complexity (ARC)

Apache License 2.0

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If reads are mapped, but no contig is assembled, use the mapped reads for the next mapping step #18

Closed samhunter closed 11 years ago

samhunter commented 11 years ago

This is implemented, but hasn't been tested.

samhunter commented 11 years ago

This has been tested for Newbler. Spades seems to just crash if it can't get kmer histogram information, so it isn't clear if it can run without producing contigs?