Do a better job of cleaning up intermediate files if ARC is restarted

ibest / ARC

Assembly by Reduced Complexity (ARC)

Apache License 2.0

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Do a better job of cleaning up intermediate files if ARC is restarted #24

Closed samhunter closed 11 years ago

samhunter commented 11 years ago

Currently ARC can be run in a folder where it has been run before and it will skip re-indexing reads. If ARC previously crashed or was terminated prematurely it won't have cleaned up a variety of intermediary files however (bowtie idx, assembly folder, etc). If ARC detects that it is being re-run clean up all of these files so that it will run successfully.

samhunter commented 11 years ago

Fixed, it should clean up everything, this has been tested and appears to be working correctly.