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ibest / ARC

Assembly by Reduced Complexity (ARC)
Apache License 2.0
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idiot proof dependencies #35

Closed zeeev closed 10 years ago

zeeev commented 10 years ago

currently ARC will install if dependencies are not OK.

running install
running build
running build_py
running build_scripts
running install_lib
running install_scripts
changing mode of /usr/bin/ARC to 775
running install_egg_info
Removing /usr/lib/python2.6/site-packages/ARC-1.1.0-py2.6.egg-info
Writing /usr/lib/python2.6/site-packages/ARC-1.1.0-py2.6.egg-info
samhunter commented 10 years ago

ARC previously checked for all external dependencies (Newbler, SPAdes, BLAT, Bowtie2) but did not check that Biopython was installed. It still doesn't check that a patched version of BLAT is available or that Biopython is up-to-date, however it does now check that Biopython can be imported and prints an error (with a link to biopython.org) if Biopython is not available when ARC is run.

zeeev commented 10 years ago

You're the man. Thanks.