Retain Fastg output from Spades

ibest / ARC

Assembly by Reduced Complexity (ARC)

Apache License 2.0

41 stars 5 forks source link

Retain Fastg output from Spades #54

Open samhunter opened 8 years ago

samhunter commented 8 years ago

Spades generates a FASTG format file as well as FASTA for contigs. Some users would appreciate having the FASTG contigs available to them.

quxiaojian commented 8 years ago

Yeah. Thank you Sam. Really I could realize this by adding the parameter keep_assemblies=True. If anyone could keep only the Fastg file, it would be better. Thanks. XJ