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ibrahimethemhamamci / CT-CLIP

A foundation model utilizing chest CT volumes and radiology reports for supervised-level zero-shot detection of abnormalities
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Long Preprocessing Times #13

Open aakritil opened 2 months ago

aakritil commented 2 months ago

How long should the data preprocessing steps take? It seems to be stalling on my end - running for more than 3 hours.

sezginerr commented 2 months ago

Yes, actually, it takes time to preprocess. I can send adjusted data.py and data_inference.py that does the preprocessing during data loading in a separate repository if it is more convenient for you.

aakritil commented 1 month ago

that would be great!

qic999 commented 1 month ago

Hi @aakritil, could you send me the adjusted data.py and data_inference.py?

sezginerr commented 1 month ago

Hi @aakritil and @qic999, you can find example scripts here: https://github.com/sezginerr/datasets_for_niigz/tree/main

I will update them later to make them little faster but for now, they should work.

sezginerr commented 1 month ago

Hi @aakritil and @qic999, I have updated the scripts as there was a problem in the preprocessing. FYI.