ibrant02 water-contamination issues

ibrant02 / water-contamination

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Bump numpy from 1.15.4 to 1.22.0

#22 dependabot[bot] opened 2 years ago
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Running whole dirctories

#21 ibrant02 opened 5 years ago
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Be able to run mutliple tissue samples at once.

#20 ibrant02 opened 5 years ago
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Be able to run tissue samples.

#19 ibrant02 opened 5 years ago
1
Be able to run multiple blood samples at once.

#18 ibrant02 opened 5 years ago
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Be able to run blood samples.

#17 ibrant02 opened 5 years ago
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Make a feature that will allow you to change the output file names or output directories with the "find_contaminants" call

#16 ibrant02 closed 5 years ago
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Add init files where necessary

#15 willmooney3 closed 5 years ago
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13 local blast

#14 ibrant02 closed 5 years ago
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Use local blast for remaining read identification

#13 sjfranklin closed 5 years ago
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Add ability to call BLAST for a given FASTA file

#12 willmooney3 closed 5 years ago
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Fixed Xmx argument to be part of bbduk

#11 willmooney3 closed 5 years ago
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Fix qsub parameters

#10 willmooney3 closed 5 years ago
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A little bit of cleanup and glue code to get qsub/bbduk commands running

#9 willmooney3 closed 5 years ago
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Add a function that can pull in all of the reference files from a directory

#8 willmooney3 closed 5 years ago
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Add a function that executes the command you built

#7 willmooney3 closed 5 years ago
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Move defaults to argparser

#6 willmooney3 closed 5 years ago
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Add function to construct a qsub command around the constructed bbduk command

#5 willmooney3 closed 5 years ago
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Add existing command building functions to a file water_contamination/lib/command.py

#4 willmooney3 closed 5 years ago
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Add exsiting argument parsing to the entrypoint script

#3 willmooney3 closed 5 years ago
1
Add an entrypoint script in a directory called water_contamination/scripts

#2 willmooney3 closed 5 years ago
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Add an entrypoint to setup.py

#1 willmooney3 closed 5 years ago
0