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icbi-lab / NeoFuse

NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
GNU General Public License v3.0
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Increase sleep from 30 to 120 seconds before running build_temp.py #14

Closed kevinpryan closed 2 years ago

kevinpryan commented 2 years ago
  1. Change implemented in both NeoFuse_single.sh and NeoFuse_multi.sh, due to issue mentioned in #11 with NeoFuse_single.sh failing on certain samples.
  2. Error messages creating final outputs changed so that they are specific to the script that failed.

This is just how I changed the scripts myself, there are probably more robust fixes to the issue out there, e.g. the use tests, either in the bash scripts or the build_temp.py to wait if the input files have not yet been created. You might want to implement the fix in a different way.

abyssum commented 2 years ago

This will do the trick, for now, I would have to look into this more closely though. I will update the image to include the changes asap. Thank you for taking the time to create the PR.