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icbi-lab / NeoFuse

NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
GNU General Public License v3.0
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Does the result change between single samples and multiple samples? #9

Closed Apprentice2 closed 3 years ago

Apprentice2 commented 3 years ago

I am trying to implement NeoFuse using a supercomputer. I know that NeoFuse has single samples mode and multiple samples mode. I want to apply NeoFuse to RNA-seq data of 20 samples, but when I run it in multiple samples mode, it fails with a permission error. So, I want to apply NeoFuse to each of the 20 samples in the single sample mode. So I would like to ask, is there any difference in the results between single sample mode and multiple sample mode? I would appreciate it if you could tell me.

riederd commented 3 years ago

There should be no difference. In single mode only one sample per run is processed and in multi sample mode multiple samples are in a run. HTH

Apprentice2 commented 3 years ago

Thank you very match!