Closed christophechu closed 9 months ago
This sounds again like an incompatibility of the gtfparse library with polars. See https://github.com/icbi-lab/infercnvpy/issues/86
thx, in order not to affect the normal use of other packages, I chose to create a new infercnv-specific environment and specify that the Polars version of 0.15.* is installed and used normally
I pinned gtfparse<2 in the latest release which doesn't use polars. This should fix the issue.
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when I changed the
toggle_string_cache
toenable_string_cache
in read_gtf.py , another error occurredscan_csv() got an unexpected keyword argument 'sep'