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icbi-lab / infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
https://infercnvpy.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
122 stars 27 forks source link

Update _copykat.py #124

Closed josephreplogle closed 4 months ago

josephreplogle commented 4 months ago

Update to include cell_line and window_size parameters

codecov-commenter commented 4 months ago

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

Comparison is base (527284c) 56.20% compared to head (a529919) 55.94%.

:exclamation: Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #124 +/- ## ========================================== - Coverage 56.20% 55.94% -0.27% ========================================== Files 13 13 Lines 427 429 +2 ========================================== Hits 240 240 - Misses 187 189 +2 ``` | [Files](https://app.codecov.io/gh/icbi-lab/infercnvpy/pull/124?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=icbi-lab) | Coverage Δ | | |---|---|---| | [src/infercnvpy/tl/\_copykat.py](https://app.codecov.io/gh/icbi-lab/infercnvpy/pull/124?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=icbi-lab#diff-c3JjL2luZmVyY252cHkvdGwvX2NvcHlrYXQucHk=) | `13.79% <0.00%> (-0.50%)` | :arrow_down: |