Open zktuong opened 6 days ago
thanks for reporting... gtfparse again, I should try to get rid of that package somehow.
I believe the best solution is to introduce alternative ways of retrieving the genomic positions, see https://github.com/icbi-lab/infercnvpy/issues/144
Report
HI @grst,
just wanted to flag to you that with a fresh installation of latest pandas/numpy in the environment, importing
infercnvpy
causes this to come back withAttributeError: _ARRAY_API not found
similar to problems faced here https://github.com/spyder-ide/spyder/issues/22187To reproduce:
I found that it's becausse
gtfparse
has a super strictpyarrow
requirement Related to: https://github.com/openvax/gtfparse/issues/47Forcing installation with
pyarrow>=17.0.0
gets around this but i just have to deal with the pip dependency resolver error.Version information
No response