Open grst opened 2 years ago
Hello @grst Any plan to add the tutorial of CopyKat to the website (https://icbi-lab.github.io/infercnvpy/tutorials/reproduce_infercnv.html)? Thanks! Best, YJ
Eventually yes, but it's likely not going to happen soon (i.e. within the next few months). This is more of a side-project and I can't currently justify to spend more time on it.
On Mon, 17 Jan 2022 at 04:46, hyjforesight @.***> wrote:
Hello @grst https://github.com/grst Any plan to add the tutorial of CopyKat to the website ( https://icbi-lab.github.io/infercnvpy/tutorials/reproduce_infercnv.html)? Thanks! Best, YJ
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I feel
rpy2
is unreliable, the R packages are cumbersome to install and a lot of additional dependencies. On top of that, the R methods are relatively slow compared to theinfercnv
algorithm in Python and it makes sense to run them in parallel on individual patients, potentially on HPC.I would suggest to
obs
)infercnvpy
can be used.