Closed KunFang93 closed 2 years ago
Hi, I guess you need to install the "patch" program on your system.
Hi,
If I am understand correctly, we only need to install singularity and nextflow and the pipeline will take care of all other packages installation? I wondered how could we install the "patch" program and why this 'patch' program are not included in the pipeline? Thanks~
Best, Kun
It seems we overlooked that in the documentation, because of patch was installed per default on our system. I put it on the todos for the next release.
Got it, thanks for your help!
Hi,
Sorry for bothering again. I found that
works in our login node of HPC cluster.
However, the pipeline failed when I tried to submit the pipeline to SLURM. The command I used:
The context in nextflow.bash
The .nextflow.log
I notice that there is option that to use
-profile cluster
in the pipeline but I am not sure how to use it for our SLURM system. I wondered if you could give any suggestions of running the pipeline in SLURM. Thanks for your time and help!Best, Kun