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icbi-lab / nextNEOpi

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
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Is .cram input format supported? #69

Closed yh154 closed 6 months ago

yh154 commented 6 months ago

Dear nextNEOpi developer,

May I use CRAM instead of BAM files as input? I have CRAM for both RNA and WES.

Cheers, Yuan

riederd commented 6 months ago

This is not implemented. But we may add the feature to nextNEOpi2 which is currently under development.