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icbi-lab / nextNEOpi

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
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Is .cram input format supported? #69

Closed yh154 closed 10 months ago

yh154 commented 10 months ago

Dear nextNEOpi developer,

May I use CRAM instead of BAM files as input? I have CRAM for both RNA and WES.

Cheers, Yuan

riederd commented 10 months ago

This is not implemented. But we may add the feature to nextNEOpi2 which is currently under development.