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icbi-lab / nextNEOpi

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
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mixMHC2pred not triggered when custom HLAs are used #71

Open mantczakaus opened 9 months ago

mantczakaus commented 9 months ago

As in the title: when custom HLAs are used the mixMHC2pred is not run. I have both HLA class I and II defined in the file. I suspect this may be because it is dependent on HLA_HD but I'm not sure.

if(have_HLAHD) {
    process 'pepare_mixMHC2_seq' {
riederd commented 6 months ago

Thanks for spotting this, and sorry for the long silence. We will provide a fix in the next release.