I am running nextNEOpi on wgs data and I am running into an issue with NEOFuse, specifically with MHCFlurry. The sample229_dwn_MHCI_final.log gives me this:
Traceback (most recent call last):
File "/usr/local/bin/source/build_temp.py", line 122, in
final_out(inFile, outFile)
File "/usr/local/bin/source/build_temp.py", line 61, in final_out
with open(assoc_file) as csv_file:
FileNotFoundError: [Errno 2] No such file or directory: './sample229_dwn/NeoFuse/tmp/MHC_I/sample229_dwn_8_BAZ2A_HSD17B6_1_8.tsv'
I have tried using the fix from issue #25 but it did not work and I have tried running the command within the correct work directory which also does not fix the error, I am not sure what else I can do to fix this.
I am running nextNEOpi on wgs data and I am running into an issue with NEOFuse, specifically with MHCFlurry. The sample229_dwn_MHCI_final.log gives me this:
Traceback (most recent call last): File "/usr/local/bin/source/build_temp.py", line 122, in
final_out(inFile, outFile)
File "/usr/local/bin/source/build_temp.py", line 61, in final_out
with open(assoc_file) as csv_file:
FileNotFoundError: [Errno 2] No such file or directory: './sample229_dwn/NeoFuse/tmp/MHC_I/sample229_dwn_8_BAZ2A_HSD17B6_1_8.tsv'
I have tried using the fix from issue #25 but it did not work and I have tried running the command within the correct work directory which also does not fix the error, I am not sure what else I can do to fix this.