icbm-iupui / volumetric-tissue-exploration-analysis

3D TISSUE CYTOMETRY PLUGIN FOR IMAGEJ DOWNLOAD and INSTALL:
http://imagej.net/VTEA
Other
11 stars 3 forks source link

Add normalization tool, for batch correction #33

Open icbm-iupui opened 6 years ago

icbm-iupui commented 6 years ago

Implement dynamic time warping to manage batch effects. Uses our existing dependence on SMILE.

https://github.com/haifengl/smile/blob/master/math/src/main/java/smile/math/distance/DynamicTimeWarping.java

winfrees commented 2 years ago

Push this to a feature for combined analysis with batch correction, targeted for release in v1.5. This will include other normalization approaches tested in the field.