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icbm-iupui / volumetric-tissue-exploration-analysis

3D TISSUE CYTOMETRY PLUGIN FOR IMAGEJ DOWNLOAD and INSTALL:
http://imagej.net/VTEA
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Segmentation using LSConnect throws error #47

Closed surajkhochare closed 5 years ago

surajkhochare commented 5 years ago

The steps are as follows: 1) Open VTEA and load image in first workflow. 2) Process the first image and perform segmentation using LSConnect. 3) Workflow_1 or Image_0 completes segmentation successfully. 4) Now, add another workflow and load image after 3D Median filtering. 5) Process this image and go for segmentation. 6) The error can be seen in logs after clicking 'Find Objects' to perform segmentation.

surajkhochare commented 5 years ago

I think the issue is because of loading an image with single channel in VTEA. If we load a multiple channel image, the segmentation is completed successfully but it takes lot of time.

surajkhochare commented 5 years ago

This process is working fine if we use Connect3D instead of LSConnect3D.

icbm-iupui commented 5 years ago

Commit 55689d8 fixed this issue.