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icbm-iupui / volumetric-tissue-exploration-analysis

3D TISSUE CYTOMETRY PLUGIN FOR IMAGEJ DOWNLOAD and INSTALL:
http://imagej.net/VTEA
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Importing segmention #57

Closed schienstockd closed 4 years ago

schienstockd commented 4 years ago

I have an image that is already segmented ie/ I have a TIFF with individual objects.

I would like to import the object TIFF and the fluorescence image to gate on cells.

The segmentation pipeline that I used could not be done with the processing function in your plugin. It is a bit more customised.

winfrees commented 4 years ago

Thank you for your interest in VTEA. How are your objects defined-as a color-coded (RGB) or integer images?

schienstockd commented 4 years ago

They are 32-bit labelled integer images. Every object has a unique ID. Then I would like to plot and gate based on the intensity for every object for every channel from another 6-channel image.

winfrees commented 4 years ago

Great. A second request, (#56) is asking for nearly the same thing. I'm going to combine your two requests. I think this is critical functionality I can spend some time on.