Create a package

[iparask]

Create a python package for the Penguins use case named iceberg-penguins.search.

[bspitzbart]

I posted the penguins package at: https://test.pypi.org/project/iceberg-penguins.search/ It installs fine with --no-deps, but still has issues when installing with the dependencies.

(pen_test2) [bspitzbart@login2 Penguins_package]$ python3 -m pip install --index-url https://test.pypi.org/simple/ iceberg-penguins.search Looking in indexes: https://test.pypi.org/simple/ Collecting iceberg-penguins.search Downloading https://test-files.pythonhosted.org/packages/2e/1f/44747286aa1469238e8eb161c4d17d8e5b2cb61f8154313d59b670075b29/iceberg_penguins.search-0.2 |ââââââââââââââââââââââââââââââââ| 71kB 1.4MB/s ERROR: Could not find a version that satisfies the requirement pytorch (from iceberg-penguins.search) (from versions: none) ERROR: No matching distribution found for pytorch (from iceberg-penguins.search) (pen_test2) [bspitzbart@login2 Penguins_package]$ python3 -m pip install --index-url https://test.pypi.org/simple/ --no-deps iceberg-penguins.search Looking in indexes: https://test.pypi.org/simple/ Collecting iceberg-penguins.search Downloading https://test-files.pythonhosted.org/packages/2e/1f/44747286aa1469238e8eb161c4d17d8e5b2cb61f8154313d59b670075b29/iceberg_penguins.search-0.2 |ââââââââââââââââââââââââââââââââ| 71kB 1.4MB/s Installing collected packages: iceberg-penguins.search Successfully installed iceberg-penguins.search-0.2.4

[bspitzbart]

(this is just a note to myself, but if anyone has any clues let me know) +Install from cloned repo in a fresh virtualenv: (test) (base) [bspitz@login005 Penguins]$ pip install --upgrade --user . ERROR: Can not perform a '--user' install. User site-packages are not visible in this virtualenv. (test) (base) [bspitz@login005 Penguins]$ deactivate +outside virtualenv (base) [bspitz@login005 Penguins]$ pip install --upgrade --user . Processing /pylon5/mc3bggp/bspitz/Penguins_test/Penguins Could not install packages due to an EnvironmentError: [('/pylon5/mc3bggp/bspitz/Penguins_test/Penguins/.git/objects/pack/pack-c560714430205677d64e9066e8b495468d5ef408.pack', '/tmp/pip-req-build-o1l_3kw4/.git/objects/pack/pack-c560714430205677d64e9066e8b495468d5ef408.pack', "[Errno 13] Permission denied: '/tmp/pip-req-build-o1l_3kw4/.git/objects/pack/pack-c560714430205677d64e9066e8b495468d5ef408.pack'"), ('/pylon5/mc3bggp/bspitz/Penguins_test/Penguins/.git/objects/pack/pack-c560714430205677d64e9066e8b495468d5ef408.idx', '/tmp/pip-req-build-o1l_3kw4/.git/objects/pack/pack-c560714430205677d64e9066e8b495468d5ef408.idx', "[Errno 13] Permission denied: '/tmp/pip-req-build-o1l_3kw4/.git/objects/pack/pack-c560714430205677d64e9066e8b495468d5ef408.idx'")]

[bspitzbart]

(another note to self)

• will not install from pypi inside virtualenv, but does outside (test) (base) [bspitz@login005 Penguins]$ pip install --upgrade iceberg-penguins.search==0.2.4.3 Traceback (most recent call last): File "/pylon5/mc3bggp/bspitz/Penguins_test/Penguins/test/bin/pip", line 7, in from pip._internal.cli.main import main ImportError: No module named 'pip._internal.cli'

[bspitzbart]

Last incompatibilities: iceberg-penguins-search 0.2.4.4 has requirement scipy==0.19.0, but you'll have scipy 1.2.1 which is incompatible. pandas 0.24.2 has requirement numpy>=1.12.0, but you'll have numpy 1.12.0b1 which is incompatible. scikit-image 0.15.0 has requirement pillow>=4.3.0, but you'll have pillow 4.2.1 which is incompatible. pywavelets 1.1.1 has requirement numpy>=1.13.3, but you'll have numpy 1.12.0b1 which is incompatible. Installing collected packages: cycler, matplotlib, torch, lxml, Glymur, olefile, Pillow, torchvision, scipy, opencv-python, jsonpointer, jsonpatch, torchfile, websocket-client, visdom, shapely, docopt, pandas, pyproj, imageio, PyWavelets, decorator, networkx, scikit-image, gisrastertools, scikit-learn, iceberg-penguins.search Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/cycler.py' Consider using the --user option or check the permissions.

[AymenFJA]

The Penguins package is available now via pypi here.