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iceberg-project / Seals

This repo will be used for ICEBERG-related science: scripts, models, figures, and findings related to ICEBERG and its Seal detection use case.
MIT License
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pip install iceberg_seals.search error #58

Closed bspitzbart closed 5 years ago

bspitzbart commented 5 years ago

I installed iceberg_seals.search with: virtualenv seals source seals/bin/activate module load python3 module load cuda pip3 install iceberg_seals.search iceberg_seals.tiling --help

And get: (seals) [bspitz@login018 ~]$ iceberg_seals.tiling --help Traceback (most recent call last): File "/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/numpy-1.12.0b1-py3.5-linux-x86_64.egg/numpy/core/init.py", line 16, in from . import multiarray ImportError: libmkl_rt.so: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/bspitz/seals/bin/iceberg_seals.tiling", line 8, in from iceberg_seals.search.tiling.tile_raster import parse_args, tile_raster File "/home/bspitz/seals/lib/python3.5/site-packages/iceberg_seals/search/tiling/tile_raster.py", line 16, in import numpy as np File "/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/numpy-1.12.0b1-py3.5-linux-x86_64.egg/numpy/init.py", line 142, in from . import add_newdocs File "/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/numpy-1.12.0b1-py3.5-linux-x86_64.egg/numpy/add_newdocs.py", line 13, in from numpy.lib import add_newdoc File "/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/numpy-1.12.0b1-py3.5-linux-x86_64.egg/numpy/lib/init.py", line 8, in from .type_check import * File "/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/numpy-1.12.0b1-py3.5-linux-x86_64.egg/numpy/lib/type_check.py", line 11, in import numpy.core.numeric as _nx File "/opt/packages/python/Python-3.5.2-icc-mkl/lib/python3.5/site-packages/numpy-1.12.0b1-py3.5-linux-x86_64.egg/numpy/core/init.py", line 24, in raise ImportError(msg) ImportError: Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. If you're working with a numpy git repo, try git clean -xdf (removes all files not under version control). Otherwise reinstall numpy.

bspitzbart commented 5 years ago

'iceberg_seals.tiling --help' works on seawulf But predicting gives: (seals) [bspitzbart@login2]$ iceberg_seals.predicting --help Traceback (most recent call last): File "/gpfs/scratch/bspitzbart/seals/bin/iceberg_seals.predicting", line 19, in from utils.model_library import * ModuleNotFoundError: No module named 'utils'